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They were incorporated into the Federation Starfleet along with the Earth Starfleet. Though it is suggested in "In a Mirror Darkly" that the Andorian Imperial Guard continued on following the creation of the Federation and the Federation Starfleet - which indicates that the Andorians might not have had their entire fleet join Starfleet.


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I don't think that any of these worlds gave their entire fleets to Starfleet because that would leave their homeworlds tactically vulnerable. It suggested a number of times that when a world joins the Federation most of their military becomes Starfleet but a small percentage remain to act as home guard units.

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